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Transcriptomics
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Bulk RNA Seq Data Analysis: Mapping with Bowtie2 & Generating Expression Table with RSEM

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In this video tutorial, you will learn about: In this video tutorial, you will: * Learn how to prepare and run an RNA-Seq pipeline on the T-BioInfo Platform (https://server.t-bio.info/). * Project Dataset used for this pipeline: Humanized mice with implanted breast tumors samples (PDX Project). * Objective: To generate gene expression tables from the raw RNA-seq reads (FASTQ files) * Pipeline Workflow: Start → Trimmomatic → PCR Clean → Bowtie2-t → RSemExpTable → End. Reference Resources Used In Video Tutorial: * Course 5: Transcriptomics - https://learn.omicslogic.com/courses/course/course-5-transcriptomics * Patient Derived Xenograft Models - https://learn.omicslogic.com/courses/course/project-06-patient-derived-xenograft-models * T-BioInfo Platform - https://server.t-bio.info/