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Transcriptomics
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Bulk RNA-Seq Data Analysis: Mapping with HiSat2 and Quantification with HTSeq (Output Overview)

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In this tutorial, you will: * Learn about the various outputs that we obtain after running an RNA-Seq pipeline on the T-BioInfo Platform (https://server.t-bio.info/). * Pipeline Workflow: Start → Trimmomatic → PCR Clean → HiSat2 → HTseq → End. * Outputs obtained range from mapping stats tables to several gene expression files whose counts of expression can be in FPKM, read counts, or TPM (normalized expression). Reference Resources Used In Video Tutorial: * Course 5: Transcriptomics - https://learn.omicslogic.com/courses/course/course-5-transcriptomics * Patient Derived Xenograft Models - https://learn.omicslogic.com/courses/course/project-06-patient-derived-xenograft-models * T-BioInfo Platform - https://server.t-bio.info/