CellLines: Workshop Files and References
Machine Learning for Transcriptomics Data Workshop A subset from the "Modeling Precision Medicine Treatment Selection for Patients Based on Multi-Omics Biomarkers" series. For thi...
RNA-Seq Data Analysis – Arabidopsis thaliana
Arabidopsis. is a well studied organism that is often viewed as a model organism in plant biology. Some of it’s important advantages include: -Small size of genome -Short generatio...
Libraries of Small Molecules Analysis
In this Tutorial we’ll be doing a project with Libraries of Small Molecules using the T-BioInfo platform. We’ll be running a Query on a 3d molecule using the mol3 format against PUBC...
RNA-Seq Analysis Tutorial – Grosmannia clavigera
After following the steps in the above video, the files used for uploading sample and genome data are referenced by the SVL files contained in this zip: click here to download it. Those steps in...
RNA-Seq Analysis Runthrough – Gene Expression
In this tutorial we’ll be running a One-Button RNA-Seq pipeline. To do this click RNA-Seq, use pre-defined options and then pick your one button, either Gene or Differential Expression. N...
Libraries of Small Molecules Analysis – Curaxin
Cancer cells are able to acquire resistance to therapies with a single target; therefore multitargeted therapies provide the best chance for success for effectively treating cancer. Some conventi...
Data Mining / Post Processing
To use the Data Mining analysis section, the user has to have one or more tables that are in a proper format. It can operate with genomic, transcriptomic, proteomic or metabolomic data that ...
RNA-Seq – RSEM Simulation
RNA-Seq – RSEM Simulation In RNA-Seq, we can use simulated data, and this video shows how using the rsem-simulate-reads module. In this tutorial we’ll be using the RNA-Seq function ...
ChIP-Seq Analysis
ChIP-Seq Analysis ChIP-Seq, or chromatin immunoprecipitation sequencing, is a technique that performs analysis of transcriptome data generated by next-generation sequencing technologies or ...
ChIP-Seq Data Analysis – Arabidopsis thaliana
In this tutorial we be using chIP-Seq on the T-BioInfo platform. We’ll be getting out data from a research paper, “Natural variation of H3K27me3 distribution between two Arabidopsis ...
RNA-SEQ ANALYSIS WITH ARADIOPSIS THALIANA – PART 2, MACHINE LEARNING
For information about how to get to the data needed to run machine learning, please view Part 1. In this video, we go through several types of machine learning options on the T-BioInfo Platform: Qu...
RNA-Seq Analysis with Arabidopsis thaliana - Part 1, Gene Expression
The data referenced in the above video is from GSE57953, and is stored on our server in an error corrected format. The file to upload as NGS data is inside this ZIP file.
Virology Analysis Tutorial - Polio with CirSeq
CirSeq is a biological method that was created to look at genetically diverse populations of RNA viruses. This method creates a circularized sequence with tri-repeats of the viral genome. This all...
T-BioInfo Interface Overview
When you open the T-BioInfo platform, you will see a list of data types that correlate with different sections of the platform. As an example, we can choose the RNA seq pipeline by clicking on the ...
Virology - LayerCake Overview
One of the areas that we’re working in application to Virology is a visual discovery environment that displays the results from data analysis of CirSeq data. If you look here on top, you can ...
RNA-Seq Analysis of Macrophages in mouse model Lung Cancer
Pine Biotech - Profiling Tumor-associated Macrophages Using RNA-Seq from Tom Koch Download a copy of this presentation. Project Title: Applying Factor Regression Analysis in a Mouse Model St...